Appimages, snaps and flatpaks, which one do you prefer and why?
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None of the above. Native debs/rpms/whatever for desktops, docker images for servers.
but what about the apps that are not in the official repository?
for example tuba the mastodon client
Tuba is in the AUR
The aur has now broke your system congrats
Neither. I exclusively use Nix packages. If I had to pick, AppImage because I can easily extract it to package for Nix :P
None
debs
Nix.